Enzyme simulator: results

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Iterations:– 5 +  Columns:– 8 +  Style: SNFG | UOXF  
GlcNAc limit:– 4 +  Cell height: – 4 + Toggle: labels
Structures
12 gangliosides generated
Show / hide: structures
Jump to: statistics | enzymes

Click on a glycan to open it in GlycoForm. Structures are labelled using Svennerholm notation

GlcCer
GA1
GM1a
LacCer
GalCer
GM1
GA2
GM2
GD2
GM3
GM4
GD3
 
 
Download structures as:
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| GlycoCT
 Hydrolyse these structures: go
Glycan profile
Lex: 0 (0%)    SLex: 0 (0%)    Lea: 0 (0%)    SLea: 0 (0%)    Leb: 0 (0%)    Ley: 0 (0%)    A: 0 (0%)    B: 0 (0%)    H: 0 (0%)    Sda/Cad: 0 (0%)   
Enzyme profile
1 enzyme is knocked out Change
Knockout:
   
   
   
   
   
   
   
   
   
   
  (mouseover to reveal the enzyme name; click to toggle that activity)
Reaction network
GTGTT->GTLTT->LTL4GTGT->L4GT[S3]LTLT->[S3]LT[S3]L4GTL4GT->[S3]L4GTVb4L4GTL4GT->Vb4L4GT[S8S3]L4GT[S3]L4GT->[S8S3]L4GTVb4[S3]L4GT[S3]L4GT->Vb4[S3]L4GTL3Vb4L4GTVb4L4GT->L3Vb4L4GTS3L3Vb4L4GTL3Vb4L4GT->S3L3Vb4L4GTVb4[S8S3]L4GT[S8S3]L4GT->Vb4[S8S3]L4GTL3Vb4[S3]L4GTVb4[S3]L4GT->L3Vb4[S3]L4GT
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Network properties: no. of nodes = 13 ; avg degree = 1.8462

Colour key: N-acetylgalactosaminyltransferases (brown); N-acetylglucosaminyltransferases (blue); fucosyltransferases (red); galactosyltransferases (yellow); sialyltransferases (magenta); sulfotransferases (orange)


Site last updated 2023-03-24